DSI Studio Basics & Configurations

Before practicum on Friday, please complete following:

• Download DSI-Studio even if your version is very recent.

During practicum on Friday:

(5 min) DSI Studio

• Software environment and hardware requirements
• Source code
• Versions

(5 min) DSI Studio Websites

• dMRI Data website
• Documentations
• Discussion forum

(5 min) DSI Studio Interface

• Graphic user Interface
• GUI-based batch system
• Command line interface
• Console
• Report System

(10 min) DSI Studio Atlases

• About the MNI space
• https://github.com/frankyeh/DSI-Studio-atlas
• Location within the DSI Studio package

Windows versions:

Mac versions:

(10 min) Accessory Tools

• Image viewer/editor
• Registration tools (example file: 100206_qa.nii.gz)

(10 min) 3D Interface

• Open [Step T3 Fiber Tracking][Open ICBM152_adult template]
• Interface

• Shortcuts
• Atlas function: identify the following structures using T1W and FreeSurferDKT atlases

source: Gray’s anatomy 727, 726

• Region drawing and editing tools
• Surface rendering
  • 100206.src.gz.gqi.1.7.fib.gz

Assignment:

Upgrade low resolution random parcellation to 1-mm ICBM152 space

• Steps
• Source data